SCIP211 SCIP Report

Summary

SCIP211 SCIP Report

Predicted fetal genotype for the S allele: Homozygous Mutant

SCIP211 SCIP Report

Report for the S allele

Summary Statistics

Mean Paternal Fraction: 1.636706587997928

Median Paternal Fraction: 1.552969791913604

IQR Paternal Fraction: 1.552969791913604

Mean Fetal Fraction: 3.273413175995856

Median Fetal Fraction: 3.105939583827208

IQR Fetal Fraction: 1.0605608344203077

Total Count: 1219

Alternative Count: 721

Alternative Ratio: 0.5914684167350287

FL_SNPs Table

Chromosome Start End Num.reads A A_fraction G G_fraction C C_fraction T T_fraction ColMax PaternalFraction FetalFraction
chr5 17374810.0 17374811.0 965.0 13.0 1.347150 4.0 0.414508 947.0 98.134715 1.0 0.103627 98.134715 1.865285 3.730570
chr5 17374817.0 17374818.0 980.0 967.0 98.673469 0.0 0.000000 3.0 0.306122 10.0 1.020408 98.673469 1.326531 2.653061
chr5 17374823.0 17374824.0 973.0 11.0 1.130524 0.0 0.000000 0.0 0.000000 962.0 98.869476 98.869476 1.130524 2.261048
chr5 17374824.0 17374825.0 973.0 963.0 98.972251 0.0 0.000000 0.0 0.000000 10.0 1.027749 98.972251 1.027749 2.055498
chr5 17374829.0 17374830.0 932.0 1.0 0.107296 908.0 97.424893 5.0 0.536481 18.0 1.931330 97.424893 2.575107 5.150215
chr5 17374830.0 17374831.0 928.0 1.0 0.107759 909.0 97.952586 4.0 0.431034 14.0 1.508621 97.952586 2.047414 4.094828
chr5 17374843.0 17374844.0 906.0 1.0 0.110375 893.0 98.565121 2.0 0.220751 10.0 1.103753 98.565121 1.434879 2.869757
chr5 17374844.0 17374845.0 932.0 12.0 1.287554 5.0 0.536481 915.0 98.175966 0.0 0.000000 98.175966 1.824034 3.648069
chr5 17374845.0 17374846.0 937.0 12.0 1.280683 3.0 0.320171 922.0 98.399146 0.0 0.000000 98.399146 1.600854 3.201708
chr5 17374852.0 17374853.0 936.0 13.0 1.388889 6.0 0.641026 917.0 97.970085 0.0 0.000000 97.970085 2.029915 4.059829
chr5 17374863.0 17374864.0 918.0 0.0 0.000000 903.0 98.366013 4.0 0.435730 11.0 1.198257 98.366013 1.633987 3.267974
chr5 17374864.0 17374865.0 922.0 0.0 0.000000 904.0 98.047722 4.0 0.433839 14.0 1.518438 98.047722 1.952278 3.904555
chr5 17374870.0 17374871.0 942.0 931.0 98.832272 0.0 0.000000 0.0 0.000000 11.0 1.167728 98.832272 1.167728 2.335456
chr5 17374873.0 17374874.0 933.0 11.0 1.178992 5.0 0.535906 917.0 98.285102 0.0 0.000000 98.285102 1.714898 3.429796
chr5 17374877.0 17374878.0 935.0 10.0 1.069519 3.0 0.320856 921.0 98.502674 1.0 0.106952 98.502674 1.497326 2.994652
chr5 17374880.0 17374881.0 914.0 901.0 98.577681 0.0 0.000000 3.0 0.328228 10.0 1.094092 98.577681 1.422319 2.844639
chr5 17374882.0 17374883.0 902.0 10.0 1.108647 3.0 0.332594 887.0 98.337029 2.0 0.221729 98.337029 1.662971 3.325942
chr5 17374889.0 17374890.0 897.0 884.0 98.550725 1.0 0.111483 2.0 0.222965 10.0 1.114827 98.550725 1.449275 2.898551
chr5 17374890.0 17374891.0 902.0 10.0 1.108647 0.0 0.000000 0.0 0.000000 892.0 98.891353 98.891353 1.108647 2.217295
chr5 17374891.0 17374892.0 896.0 9.0 1.004464 4.0 0.446429 883.0 98.549107 0.0 0.000000 98.549107 1.450893 2.901786
chr5 17374892.0 17374893.0 892.0 11.0 1.233184 9.0 1.008969 872.0 97.757848 0.0 0.000000 97.757848 2.242152 4.484305
chr5 17374902.0 17374903.0 844.0 0.0 0.000000 833.0 98.696682 2.0 0.236967 9.0 1.066351 98.696682 1.303318 2.606635
chr5 17374910.0 17374911.0 820.0 809.0 98.658537 1.0 0.121951 1.0 0.121951 9.0 1.097561 98.658537 1.341463 2.682927
chr5 17374913.0 17374914.0 715.0 708.0 99.020979 0.0 0.000000 1.0 0.139860 9.0 1.258741 99.020979 0.979021 1.958042
chr5 17374930.0 17374931.0 630.0 7.0 1.111111 4.0 0.634921 619.0 98.253968 0.0 0.000000 98.253968 1.746032 3.492063
chr5 17374938.0 17374939.0 574.0 565.0 98.432056 0.0 0.000000 1.0 0.174216 8.0 1.393728 98.432056 1.567944 3.135889
chr5 17374939.0 17374940.0 576.0 6.0 1.041667 0.0 0.000000 0.0 0.000000 570.0 98.958333 98.958333 1.041667 2.083333
chr5 17374942.0 17374943.0 564.0 7.0 1.241135 9.0 1.595745 548.0 97.163121 0.0 0.000000 97.163121 2.836879 5.673759
chr5 17374943.0 17374944.0 564.0 557.0 98.758865 0.0 0.000000 0.0 0.000000 7.0 1.241135 98.758865 1.241135 2.482270
chr5 17374948.0 17374949.0 534.0 528.0 98.876404 0.0 0.000000 0.0 0.000000 6.0 1.123596 98.876404 1.123596 2.247191
chr5 17374951.0 17374952.0 496.0 0.0 0.000000 486.0 97.983871 0.0 0.000000 10.0 2.016129 97.983871 2.016129 4.032258
chr5 17374952.0 17374953.0 486.0 0.0 0.000000 479.0 98.559671 0.0 0.000000 7.0 1.440329 98.559671 1.440329 2.880658
chr5 17374954.0 17374955.0 468.0 461.0 98.504274 0.0 0.000000 0.0 0.000000 7.0 1.495726 98.504274 1.495726 2.991453
chr5 17374955.0 17374956.0 460.0 0.0 0.000000 450.0 97.826087 1.0 0.217391 9.0 1.956522 97.826087 2.173913 4.347826
chr5 17374970.0 17374971.0 391.0 384.0 98.209719 0.0 0.000000 0.0 0.000000 7.0 1.790281 98.209719 1.790281 3.580563
chr6 12059867.0 12059868.0 449.0 442.0 98.440980 0.0 0.000000 0.0 0.000000 7.0 1.559020 98.440980 1.559020 3.118040
chr6 12059876.0 12059877.0 418.0 0.0 0.000000 406.0 97.129187 0.0 0.000000 12.0 2.870813 97.129187 2.870813 5.741627
chr6 12059879.0 12059880.0 405.0 0.0 0.000000 398.0 98.271605 1.0 0.246914 6.0 1.481481 98.271605 1.728395 3.456790
chr6 26509256.0 26509257.0 865.0 3.0 0.346821 9.0 1.040462 852.0 98.497110 1.0 0.115607 98.497110 1.502890 3.005780
chr6 26509257.0 26509258.0 857.0 1.0 0.116686 9.0 1.050175 847.0 98.833139 0.0 0.000000 98.833139 1.166861 2.333722
chr6 26509270.0 26509271.0 783.0 8.0 1.021711 7.0 0.893997 768.0 98.084291 0.0 0.000000 98.084291 1.915709 3.831418
chr6 26509271.0 26509272.0 784.0 2.0 0.255102 11.0 1.403061 771.0 98.341837 0.0 0.000000 98.341837 1.658163 3.316327
chr6 26509283.0 26509284.0 575.0 567.0 98.608696 1.0 0.173913 0.0 0.000000 7.0 1.217391 98.608696 1.391304 2.782609
chr6 26509288.0 26509289.0 572.0 564.0 98.601399 0.0 0.000000 0.0 0.000000 8.0 1.398601 98.601399 1.398601 2.797203
chr6 26509291.0 26509292.0 551.0 542.0 98.366606 0.0 0.000000 0.0 0.000000 9.0 1.633394 98.366606 1.633394 3.266788
chr6 26509292.0 26509293.0 545.0 535.0 98.165138 0.0 0.000000 2.0 0.366972 8.0 1.467890 98.165138 1.834862 3.669725
chr6 26509300.0 26509301.0 411.0 401.0 97.566910 0.0 0.000000 3.0 0.729927 7.0 1.703163 97.566910 2.433090 4.866180
chr6 26509301.0 26509302.0 403.0 398.0 98.759305 0.0 0.000000 0.0 0.000000 5.0 1.240695 98.759305 1.240695 2.481390
chr9 2718464.0 2718465.0 655.0 635.0 96.946565 0.0 0.000000 19.0 2.900763 1.0 0.152672 96.946565 3.053435 6.106870
chr9 2718499.0 2718500.0 678.0 8.0 1.179941 3.0 0.442478 0.0 0.000000 667.0 98.377581 98.377581 1.622419 3.244838
chr9 2718544.0 2718545.0 764.0 8.0 1.047120 2.0 0.261780 0.0 0.000000 754.0 98.691099 98.691099 1.308901 2.617801
chr9 2718575.0 2718576.0 835.0 2.0 0.239521 11.0 1.317365 0.0 0.000000 822.0 98.443114 98.443114 1.556886 3.113772
chr9 2718580.0 2718581.0 846.0 828.0 97.872340 1.0 0.118203 15.0 1.773050 4.0 0.472813 97.872340 2.127660 4.255319
chr9 2718602.0 2718603.0 766.0 752.0 98.172324 1.0 0.130548 8.0 1.044386 4.0 0.522193 98.172324 1.827676 3.655352
chr9 6903103.0 6903104.0 693.0 681.0 98.268398 1.0 0.144300 9.0 1.298701 4.0 0.577201 98.268398 1.731602 3.463203
chr9 6903104.0 6903105.0 700.0 8.0 1.142857 2.0 0.285714 689.0 98.428571 0.0 0.000000 98.428571 1.571429 3.142857
chr9 6903106.0 6903107.0 715.0 9.0 1.258741 3.0 0.419580 703.0 98.321678 0.0 0.000000 98.321678 1.678322 3.356643
chr9 6903113.0 6903114.0 700.0 8.0 1.142857 1.0 0.142857 2.0 0.285714 689.0 98.428571 98.428571 1.571429 3.142857
chr9 6903116.0 6903117.0 697.0 7.0 1.004304 1.0 0.143472 689.0 98.852224 0.0 0.000000 98.852224 1.147776 2.295552
chr9 6903120.0 6903121.0 713.0 8.0 1.122020 0.0 0.000000 0.0 0.000000 705.0 98.877980 98.877980 1.122020 2.244039
chr9 6903126.0 6903127.0 715.0 8.0 1.118881 1.0 0.139860 2.0 0.279720 704.0 98.461538 98.461538 1.538462 3.076923
chr9 6903127.0 6903128.0 713.0 10.0 1.402525 4.0 0.561010 0.0 0.000000 699.0 98.036466 98.036466 1.963534 3.927069
chr9 6903133.0 6903134.0 759.0 9.0 1.185771 1.0 0.131752 0.0 0.000000 749.0 98.682477 98.682477 1.317523 2.635046
chr9 6903138.0 6903139.0 787.0 0.0 0.000000 777.0 98.729352 2.0 0.254130 8.0 1.016518 98.729352 1.270648 2.541296
chr9 6903145.0 6903146.0 811.0 0.0 0.000000 795.0 98.027127 5.0 0.616523 11.0 1.356350 98.027127 1.972873 3.945746
chr9 6903166.0 6903167.0 810.0 800.0 98.765432 1.0 0.123457 0.0 0.000000 9.0 1.111111 98.765432 1.234568 2.469136
chr9 6903185.0 6903186.0 787.0 0.0 0.000000 777.0 98.729352 1.0 0.127065 9.0 1.143583 98.729352 1.270648 2.541296
chr9 6903186.0 6903187.0 777.0 0.0 0.000000 764.0 98.326898 3.0 0.386100 10.0 1.287001 98.326898 1.673102 3.346203
chr9 6903189.0 6903190.0 736.0 0.0 0.000000 727.0 98.777174 0.0 0.000000 9.0 1.222826 98.777174 1.222826 2.445652
chr9 6903198.0 6903199.0 738.0 8.0 1.084011 3.0 0.406504 727.0 98.509485 0.0 0.000000 98.509485 1.490515 2.981030
chr9 6903200.0 6903201.0 740.0 0.0 0.000000 728.0 98.378378 3.0 0.405405 9.0 1.216216 98.378378 1.621622 3.243243
chr9 6903207.0 6903208.0 735.0 0.0 0.000000 727.0 98.911565 0.0 0.000000 8.0 1.088435 98.911565 1.088435 2.176871
chr9 6903208.0 6903209.0 726.0 0.0 0.000000 713.0 98.209366 3.0 0.413223 10.0 1.377410 98.209366 1.790634 3.581267
chr9 6903210.0 6903211.0 731.0 720.0 98.495212 0.0 0.000000 0.0 0.000000 11.0 1.504788 98.495212 1.504788 3.009576
chr9 6903212.0 6903213.0 733.0 0.0 0.000000 719.0 98.090041 3.0 0.409277 11.0 1.500682 98.090041 1.909959 3.819918
chr9 6903221.0 6903222.0 704.0 1.0 0.142045 693.0 98.437500 2.0 0.284091 8.0 1.136364 98.437500 1.562500 3.125000
chr9 6903233.0 6903234.0 704.0 0.0 0.000000 692.0 98.295455 3.0 0.426136 9.0 1.278409 98.295455 1.704545 3.409091
chr9 6903239.0 6903240.0 706.0 0.0 0.000000 694.0 98.300283 3.0 0.424929 9.0 1.274788 98.300283 1.699717 3.399433
chr9 6903243.0 6903244.0 708.0 0.0 0.000000 695.0 98.163842 2.0 0.282486 11.0 1.553672 98.163842 1.836158 3.672316
chr9 6903254.0 6903255.0 676.0 669.0 98.964497 0.0 0.000000 0.0 0.000000 7.0 1.035503 98.964497 1.035503 2.071006
chr9 6903256.0 6903257.0 664.0 655.0 98.644578 0.0 0.000000 2.0 0.301205 7.0 1.054217 98.644578 1.355422 2.710843
chr9 6903259.0 6903260.0 641.0 0.0 0.000000 633.0 98.751950 1.0 0.156006 7.0 1.092044 98.751950 1.248050 2.496100
chr9 6903274.0 6903275.0 552.0 0.0 0.000000 546.0 98.913043 0.0 0.000000 6.0 1.086957 98.913043 1.086957 2.173913
chr9 8389305.0 8389306.0 1235.0 16.0 1.295547 2.0 0.161943 0.0 0.000000 1217.0 98.542510 98.542510 1.457490 2.914980
chr9 8389308.0 8389309.0 1293.0 14.0 1.082753 5.0 0.386698 1274.0 98.530549 0.0 0.000000 98.530549 1.469451 2.938902
chr9 8389364.0 8389365.0 1051.0 1.0 0.095147 1036.0 98.572788 3.0 0.285442 11.0 1.046622 98.572788 1.427212 2.854424
chr9 8389380.0 8389381.0 1040.0 1.0 0.096154 1026.0 98.653846 2.0 0.192308 11.0 1.057692 98.653846 1.346154 2.692308
chr9 8389407.0 8389408.0 1139.0 13.0 1.141352 7.0 0.614574 1118.0 98.156277 1.0 0.087796 98.156277 1.843723 3.687445
chr9 14747076.0 14747077.0 982.0 12.0 1.221996 2.0 0.203666 968.0 98.574338 0.0 0.000000 98.574338 1.425662 2.851324
chr9 14747083.0 14747084.0 989.0 0.0 0.000000 975.0 98.584429 4.0 0.404449 10.0 1.011122 98.584429 1.415571 2.831143
chr9 14747112.0 14747113.0 1073.0 17.0 1.584343 1.0 0.093197 0.0 0.000000 1055.0 98.322460 98.322460 1.677540 3.355079
chr9 14747117.0 14747118.0 1145.0 14.0 1.222707 3.0 0.262009 1128.0 98.515284 0.0 0.000000 98.515284 1.484716 2.969432
chr9 14747122.0 14747123.0 1151.0 12.0 1.042572 2.0 0.173762 0.0 0.000000 1137.0 98.783666 98.783666 1.216334 2.432667
chr9 14747167.0 14747168.0 1279.0 14.0 1.094605 7.0 0.547303 1258.0 98.358092 0.0 0.000000 98.358092 1.641908 3.283815
chr9 27985856.0 27985857.0 990.0 979.0 98.888889 0.0 0.000000 1.0 0.101010 10.0 1.010101 98.888889 1.111111 2.222222
chr9 27985860.0 27985861.0 1003.0 11.0 1.096710 2.0 0.199402 0.0 0.000000 990.0 98.703888 98.703888 1.296112 2.592223
chr9 27985869.0 27985870.0 994.0 0.0 0.000000 976.0 98.189135 10.0 1.006036 8.0 0.804829 98.189135 1.810865 3.621730
chr9 27985948.0 27985949.0 1143.0 12.0 1.049869 5.0 0.437445 1124.0 98.337708 2.0 0.174978 98.337708 1.662292 3.324584
chr9 27985983.0 27985984.0 1091.0 1077.0 98.716774 1.0 0.091659 2.0 0.183318 11.0 1.008249 98.716774 1.283226 2.566453
chr9 27985993.0 27985994.0 970.0 958.0 98.762887 0.0 0.000000 1.0 0.103093 11.0 1.134021 98.762887 1.237113 2.474227
chr9 27985994.0 27985995.0 968.0 955.0 98.657025 0.0 0.000000 2.0 0.206612 11.0 1.136364 98.657025 1.342975 2.685950
chr9 27986020.0 27986021.0 862.0 9.0 1.044084 0.0 0.000000 1.0 0.116009 852.0 98.839907 98.839907 1.160093 2.320186
chr9 27986022.0 27986023.0 877.0 2.0 0.228050 10.0 1.140251 864.0 98.517674 1.0 0.114025 98.517674 1.482326 2.964652
chr18 9749806.0 9749807.0 1086.0 11.0 1.012891 0.0 0.000000 0.0 0.000000 1075.0 98.987109 98.987109 1.012891 2.025783
chr18 9749854.0 9749855.0 1105.0 0.0 0.000000 1085.0 98.190045 7.0 0.633484 13.0 1.176471 98.190045 1.809955 3.619910
chr18 9749882.0 9749883.0 1072.0 80.0 7.462687 986.0 91.977612 5.0 0.466418 1.0 0.093284 91.977612 8.022388 16.044776
chr18 9749887.0 9749888.0 1087.0 11.0 1.011960 2.0 0.183993 1074.0 98.804048 0.0 0.000000 98.804048 1.195952 2.391904
chr18 9749906.0 9749907.0 1085.0 12.0 1.105991 2.0 0.184332 0.0 0.000000 1071.0 98.709677 98.709677 1.290323 2.580645
chr18 9749923.0 9749924.0 1096.0 4.0 0.364964 1070.0 97.627737 11.0 1.003650 11.0 1.003650 97.627737 2.372263 4.744526
chr18 9749931.0 9749932.0 1080.0 1069.0 98.981481 0.0 0.000000 0.0 0.000000 11.0 1.018519 98.981481 1.018519 2.037037
chr18 9749933.0 9749934.0 1078.0 1063.0 98.608534 1.0 0.092764 2.0 0.185529 12.0 1.113173 98.608534 1.391466 2.782931
chr18 9749934.0 9749935.0 1079.0 11.0 1.019462 2.0 0.185357 1.0 0.092678 1065.0 98.702502 98.702502 1.297498 2.594995
chr18 9749945.0 9749946.0 1072.0 1051.0 98.041045 1.0 0.093284 12.0 1.119403 8.0 0.746269 98.041045 1.958955 3.917910
chr18 9749947.0 9749948.0 1079.0 13.0 1.204819 5.0 0.463392 1061.0 98.331789 0.0 0.000000 98.331789 1.668211 3.336423
chr18 9749957.0 9749958.0 1073.0 12.0 1.118360 6.0 0.559180 1.0 0.093197 1054.0 98.229264 98.229264 1.770736 3.541473
chr18 9749965.0 9749966.0 986.0 5.0 0.507099 11.0 1.115619 0.0 0.000000 970.0 98.377282 98.377282 1.622718 3.245436
chr19 4569725.0 4569726.0 1356.0 1342.0 98.967552 0.0 0.000000 0.0 0.000000 14.0 1.032448 98.967552 1.032448 2.064897
chr19 4569741.0 4569742.0 1355.0 1340.0 98.892989 0.0 0.000000 0.0 0.000000 15.0 1.107011 98.892989 1.107011 2.214022
chr19 4569782.0 4569783.0 1331.0 1300.0 97.670924 0.0 0.000000 26.0 1.953418 5.0 0.375657 97.670924 2.329076 4.658152
chr19 4569790.0 4569791.0 1299.0 1270.0 97.767513 5.0 0.384911 14.0 1.077752 10.0 0.769823 97.767513 2.232487 4.464973
chr19 4569793.0 4569794.0 1286.0 1259.0 97.900467 1.0 0.077760 17.0 1.321928 9.0 0.699844 97.900467 2.099533 4.199067
chr19 4569796.0 4569797.0 1288.0 1264.0 98.136646 1.0 0.077640 14.0 1.086957 8.0 0.621118 98.136646 1.863354 3.726708
chr19 4569837.0 4569838.0 1165.0 1143.0 98.111588 1.0 0.085837 17.0 1.459227 4.0 0.343348 98.111588 1.888412 3.776824
chr19 4569839.0 4569840.0 1162.0 4.0 0.344234 13.0 1.118761 1144.0 98.450947 1.0 0.086059 98.450947 1.549053 3.098107
chr19 4569876.0 4569877.0 798.0 2.0 0.250627 9.0 1.127820 789.0 98.872180 0.0 0.000000 98.872180 1.127820 2.255639
chr19 4569878.0 4569879.0 798.0 783.0 98.120301 0.0 0.000000 9.0 1.127820 5.0 0.626566 98.120301 1.879699 3.759398
chr19 4569896.0 4569897.0 753.0 739.0 98.140770 0.0 0.000000 9.0 1.195219 5.0 0.664011 98.140770 1.859230 3.718459
chr19 4569897.0 4569898.0 753.0 738.0 98.007968 0.0 0.000000 3.0 0.398406 12.0 1.593625 98.007968 1.992032 3.984064

Graphs